The pathogen
annotated tracking
resource network


PATRN 1.0 access to patrn 1.0

As published in Gopinath et Al., Food Microbiology (2013)

Registered users may continue to access PATRN 1.0 without limitations.

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Download paper here: PDF (2.1M)

PATRN 2.0 access to patrn 2.0

DETAILED ANALYTICS FOR ADVANCED INSTRUMENTATION

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Purpose

THE PATHOGEN ANNOTATED TRACKING RESOURCE NETWORK, OR PATRN, IS A SYSTEM THAT WILL SERVE AS A COMPREHENSIVE RESOURCE FOR THE SCIENCE AND EPIDEMIOLOGICAL INVESTIGATION OF FOOD-BORNE PATHOGENS.

By transparently connecting the food safety community of Federal, State, and Academic researchers, and policy makers to a single access place, we can foster collaboration and create relationships beyond what could be achieved by working alone. PATRN was born of the following concerns:
1· Surveillance and Outbreak investigations involve a discordant variety of data types about food-borne pathogens. 2· Outbreak investigations are time sensitive and require that scientists make public health decisions using science-based knowledge.

FDA, researcher, policy maker patrn purpose



FDA, researcher, policy maker patrn purpose

Values

TO PROTECT THE PUBLIC HEALTH AND ECONOMIC WELFARE OF THE COUNTRY.

The PATRN system will help to better ensure a timely, coordinated, and efficient food emergency response by FDA, other government agencies, the Food Emergency Response Network (FERN) laboratories and international partners which are associated with the FDA’s Food Protection Plan.




Activities

PATRN WILL SYSTEMATICALLY CAPTURE, ANNOTATE AND ANALYZE DATA ON FOOD-BORNE PATHOGENS ARISING FROM INVESTIGATIONAL AND RESEARCH ACTIVITIES.

Many different data types, such as sequences, phenotypes, biomarkers, geo-temporal features, etc. will be seamlessly assimilated into the system. Data will mainly originate from expert-curated publications and submissions by surveillance/outbreak activities of a collaborative network of food safety scientific groups. PATRN will provide computational tools and expert support for data analysis in an integrated way.

FDA, researcher, policy maker patrn purpose